PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g14260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25460.4 Da PI: 4.9633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 71 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++G+r + +g+Wv+eIr+p++ ++r++lg++ +e+Aa+a++ a+++l+g Tp6g14260 71 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 120 5699**975..6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.58E-17 | 71 | 128 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.243 | 72 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-25 | 72 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-6 | 73 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-24 | 73 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-8 | 73 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.97E-16 | 73 | 128 | No hit | No description |
PRINTS | PR00367 | 8.2E-6 | 110 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSNSSNSPTT GNKQPTTFRV SSIALPSSDH QSPQSSPGSS SSPSPTPRPS LSTDGSSSTR 60 KTATGLSGRH SFFRGIRLRN GKWVSEIREP RKTTRIWLGT YPVPEMAAAA YDVAALALKG 120 SDAVLNFPGL ALTYVAPASK SAPDIRAAAA RAAEMKQPDP GGAERVLDPV QPGKEEEEEQ 180 EAMSSSLEFM DEEAMLNMPT LLTEMAEGML MSPPRMTNLT MDDSPENHEG DNLWSYK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g14260 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015478 | 1e-133 | AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15. | |||
GenBank | AK176464 | 1e-133 | AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17. | |||
GenBank | AY086443 | 1e-133 | AY086443.1 Arabidopsis thaliana clone 251466 mRNA, complete sequence. | |||
GenBank | CP002688 | 1e-133 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865890.1 | 1e-104 | ethylene-responsive transcription factor ERF025 | ||||
Swissprot | Q9FJ90 | 1e-105 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A397XMQ6 | 1e-110 | A0A397XMQ6_BRACM; Uncharacterized protein | ||||
STRING | scaffold_801641.1 | 1e-104 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13457 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-90 | ERF family protein |
Publications ? help Back to Top | |||
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