PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 397aa    MW: 45666.4 Da    PI: 6.883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05152175123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+C+ Cg+ ++++ +Lk+H +  H
  Tp6g14250 152 YVCGVCGRKCKTNIDLKKHFKQlH 175
                9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.1E-472142IPR029060PIN domain-like
PROSITE profilePS5015710.741152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061677.10E-12165306No hitNo description
Gene3DG3DSA:3.40.50.10101.1E-4237291IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSLFCNSIET LYPKPYLPQK SHFFSFSDSK FRNPTFAGFP RRRQFAIKSC LKTASSSEID  60
MVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAATALRR VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRSRRNLDFA ERKGEVTPIE PYVCGVCGRK CKTNIDLKKH FKQLHERERQ  180
KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTVVV SDRDGALGRQ  300
ADLWVPWIGV QNGEIGEADL MPEKRRRFDE ETEGESGGDG LFSLSYEENE TAEMSVESDG  360
FGRFNVSAFS EDEWVEDEED DFALSDSDED SDDELSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14250
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482547.10.0PREDICTED: uncharacterized protein LOC104761206
TrEMBLA0A178UA350.0A0A178UA35_ARATH; Uncharacterized protein
TrEMBLQ9FJ910.0Q9FJ91_ARATH; AT5g52010/MSG15_9
STRINGXP_010482547.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein