PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g14250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 397aa MW: 45666.4 Da PI: 6.883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 152 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H Tp6g14250 152 YVCGVCGRKCKTNIDLKKHFKQlH 175 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.1E-4 | 72 | 142 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.741 | 152 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 175 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 7.10E-12 | 165 | 306 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.1E-4 | 237 | 291 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MSLFCNSIET LYPKPYLPQK SHFFSFSDSK FRNPTFAGFP RRRQFAIKSC LKTASSSEID 60 MVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAATALRR VAEKLGRVVE ISAYANRHAF 120 IHLPHWVVEE RRSRRNLDFA ERKGEVTPIE PYVCGVCGRK CKTNIDLKKH FKQLHERERQ 180 KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED 240 KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTVVV SDRDGALGRQ 300 ADLWVPWIGV QNGEIGEADL MPEKRRRFDE ETEGESGGDG LFSLSYEENE TAEMSVESDG 360 FGRFNVSAFS EDEWVEDEED DFALSDSDED SDDELSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 327 | EKRRRF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g14250 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482547.1 | 0.0 | PREDICTED: uncharacterized protein LOC104761206 | ||||
TrEMBL | A0A178UA35 | 0.0 | A0A178UA35_ARATH; Uncharacterized protein | ||||
TrEMBL | Q9FJ91 | 0.0 | Q9FJ91_ARATH; AT5g52010/MSG15_9 | ||||
STRING | XP_010482547.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12584 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 0.0 | C2H2-like zinc finger protein |