PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g13400
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 223aa    MW: 24600.6 Da    PI: 9.435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g13400genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1866116255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  Tp6g13400  66 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 116
                7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-3265125IPR001471AP2/ERF domain
PROSITE profilePS5103224.34266124IPR001471AP2/ERF domain
PfamPF008472.8E-1266116IPR001471AP2/ERF domain
CDDcd000189.34E-3166124No hitNo description
SuperFamilySSF541711.57E-2266125IPR016177DNA-binding domain
SMARTSM003808.9E-3766130IPR001471AP2/ERF domain
PRINTSPR003673.7E-106778IPR001471AP2/ERF domain
PRINTSPR003673.7E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASSQQDQSA LDLITQHLLT DFPSLETFVS SIHHCTTSSL SQRKPSLATI VVPTTAPVVQ  60
EDAQRHYRGV RRRPWGKYAA EIRDPNKKGV RVWLGTFDTA MEAARGYDKA AFKLRGSKAI  120
LNFPLEAGKH EDDSGDNNDS KTVALKAKRK RQVTEDENHV RNLSSHKAVK REETEAQGEA  180
CPLTPSSWMG FWDGVDGKGM GLFSVPPLSP YPSLGHSQVS TRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2865131470ATERF1
3gcc_A2e-2865131470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g13400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607145.11e-143PREDICTED: ethylene-responsive transcription factor ERF105
RefseqXP_013671087.11e-143ethylene-responsive transcription factor ERF105
SwissprotQ8VY901e-126EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A3N6QP331e-142A0A3N6QP33_BRACR; Uncharacterized protein
STRINGBo9g100030.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-118ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]