PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g13190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19702.3 Da PI: 6.309 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.1 | 7.3e-16 | 12 | 55 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++++ tfs+Rr g++KKA+EL + C+a+v ++ifs+++k y + Tp6g13190 12 QTRKHATFSRRRSGVFKKASELATKCNAKVGIVIFSPEDKPYSF 55 799***********************************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.969 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-9 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-19 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-19 | 5 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-18 | 13 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-9 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-9 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDERKIKMEK VQTRKHATFS RRRSGVFKKA SELATKCNAK VGIVIFSPED KPYSFGTPSL 60 DVVLERFKNE DEESDNIDEG SINELEKLQK HLNSINEKVD AEEKRGKEYQ KRLESAGERF 120 EKNLEELTLE KLNENKDMLE KMHGMIQSNI DRMQASTALM LLSKDKGYGG E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g13190 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407920.1 | 6e-54 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 3e-52 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | V4MA98 | 1e-52 | V4MA98_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407920.1 | 2e-53 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-46 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
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