PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g12670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NF-YC | ||||||||
Protein Properties | Length: 209aa MW: 23123.9 Da PI: 5.0059 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 171.5 | 9.1e-54 | 45 | 144 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 qlk+ w +q+e ++dfk h+lPlarikki+k+d dv+misaeaP++++kace+fi++lt+rsw+h+eenkrrtl++sdi++av+rt+ fdfl+divprde Tp6g12670 45 QLKNLWYQQMEAVEDFKTHQLPLARIKKIMKSDRDVRMISAEAPIVFAKACEMFIVDLTMRSWIHTEENKRRTLQRSDISTAVARTFAFDFLLDIVPRDE 144 89************************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.15E-31 | 52 | 160 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-35 | 56 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.6E-21 | 64 | 127 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MENNDNTVGS HSQPTATATA TTTAIYSQPP QTASFNPFSQ QENQQLKNLW YQQMEAVEDF 60 KTHQLPLARI KKIMKSDRDV RMISAEAPIV FAKACEMFIV DLTMRSWIHT EENKRRTLQR 120 SDISTAVART FAFDFLLDIV PRDEFPPDPT YMAVRHPDGG VPYYYPPVIG GTGMYAPLPV 180 PSWPSPWPAV SGGDGEGEAG QSGGNNGGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-46 | 51 | 142 | 4 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | RRTLQRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g12670 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402087.1 | 2e-98 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q9FGP7 | 5e-66 | NFYC6_ARATH; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | V4KZY0 | 5e-97 | V4KZY0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402087.1 | 9e-98 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50480.1 | 3e-58 | nuclear factor Y, subunit C6 |
Publications ? help Back to Top | |||
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