PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g12060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 103aa    MW: 12007.5 Da    PI: 6.2547
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g12060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind361.8e-111456244
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHH CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpky 44
                  + +kl+e+++d+++++++sws++gnsf+v++e+ef  +vLp++
     Tp6g12060 14 YFRKLFEMVDDHSTDSIVSWSDSGNSFIVWNESEFCGNVLPSF 56
                  578*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-12757IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-410100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-111257IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-91560IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDLDSNHKHR YNRYFRKLFE MVDDHSTDSI VSWSDSGNSF IVWNESEFCG NVLPSFLPFK  60
EIAPPELEPP PEAFVYQRPS EAESARAVER LKKLATAMRK RQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g12060
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.21e-16heat stress transcription factor A-4a
TrEMBLA0A1J3H8M81e-33A0A1J3H8M8_NOCCA; Heat stress transcription factor A-4b
STRINGBostr.3359s0057.1.p9e-22(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-13Winged helix-turn-helix transcription repressor DNA-binding