PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g11930
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 294aa    MW: 32833.6 Da    PI: 9.3591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g11930genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20150200256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Tp6g11930 150 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 200
                7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-14150199IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23150208IPR016177DNA-binding domain
PROSITE profilePS5103225.699150207IPR001471AP2/ERF domain
CDDcd000186.14E-22150209No hitNo description
Gene3DG3DSA:3.30.730.103.0E-33150208IPR001471AP2/ERF domain
SMARTSM003804.2E-37150213IPR001471AP2/ERF domain
PRINTSPR003676.3E-12151162IPR001471AP2/ERF domain
PRINTSPR003676.3E-12173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSEVFKERPP NSEKKSVPSR HLSLLKVANQ GEHEKSRADD PERTKPLADD VYRFEDDPVV  60
GRFNRFGTEM STMVSALTQV VSARSLTSSS VETQVTNSSS SSTGLKRRRL GIDSSIPLSI  120
SPFHRLDSSL GPIESTSNAL PNEPKEKQRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  180
DTAEAAARAY DEAALRFRGN KAKLNFPEDV RILPPPPCPL PPVPPPAAVA DEVKEDVRDS  240
WSYSQLLQTS GQRSLFRREQ EESTNVLEHS QREQSLPHSS SSPIYSDFQG PSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23147210266ATERF1
3gcc_A4e-23147210266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g11930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460332.11e-99PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X2
SwissprotQ70II32e-67EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F55e-92A0A178U7F5_ARATH; Uncharacterized protein
STRINGXP_006402191.15e-76(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-58ethylene response factor 110