PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g09930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 251aa MW: 29103.2 Da PI: 8.4906 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.9e-15 | 46 | 98 | 31 | 83 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 + +++++ +d++ +W++k+i+r++++++++t+GW+ F k +gL +gD++vF Tp6g09930 46 TPTQEIVAKDLHVYEWRFKHIFRGTPRMHLFTRGWNAFMKTKGLPVGDSFVFI 98 33459***********************************************7 PP | |||||||
2 | Auxin_resp | 63.7 | 6.9e-22 | 100 | 161 | 21 | 83 |
Auxin_resp 21 tseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 s+F+ +++++++a+++k+++G++f m fe +d+s++r+sGt++g++d +++W+nS+WrsL+ Tp6g09930 100 LSQFIASCDRFVNAVNNKFIIGSKFTMWFEDNDFSKIRYSGTIIGIQD-FSIHWKNSEWRSLE 161 59**********************************************.667*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-14 | 40 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-14 | 41 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-12 | 44 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.99E-8 | 45 | 97 | No hit | No description |
Pfam | PF06507 | 6.8E-18 | 101 | 160 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKPIFDLPSK IRCTVIGIQL KVENDTDQIY TQITLLPDIT DMSHPTPTQE IVAKDLHVYE 60 WRFKHIFRGT PRMHLFTRGW NAFMKTKGLP VGDSFVFIRL SQFIASCDRF VNAVNNKFII 120 GSKFTMWFED NDFSKIRYSG TIIGIQDFSI HWKNSEWRSL EVQWDEAASI PRPNKVSPWE 180 IQHLPPSLNV SNTSFLNNKR LRHVDENGAN WWIPKLNQCQ EIGQSSINAS MSVPQLSYHH 240 ATNDLKIPSD L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 5e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
4ldw_A | 5e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
4ldw_B | 5e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
4ldx_A | 6e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
4ldx_B | 6e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
4ldy_A | 5e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
4ldy_B | 5e-40 | 3 | 184 | 65 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g09930 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024010249.1 | 5e-89 | putative auxin response factor 14 | ||||
Swissprot | Q9C8N7 | 4e-80 | ARFV_ARATH; Auxin response factor 22 | ||||
TrEMBL | A0A178WHC9 | 9e-83 | A0A178WHC9_ARATH; Auxin response factor | ||||
TrEMBL | V4L3X3 | 4e-82 | V4L3X3_EUTSA; Auxin response factor | ||||
STRING | XP_006396921.1 | 6e-83 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34390.1 | 2e-82 | auxin response factor 22 |