PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g07210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family DBB
Protein Properties Length: 154aa    MW: 16917.9 Da    PI: 4.8194
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g07210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.3e-06446541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C+ +e+ e++  C +++  lC+ C  + H+       H +vp
  Tp6g07210  4 QCEVCEKAEAEVLCCSDEAVLCKPCDIQVHEAnklfqrHHRVP 46
               7*****************************7788999977776 PP
2zf-B_box27.56.5e-095592338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
               ++ C+ ++e +  +fC +++ llC++C  ++H  ++H+
  Tp6g07210 55 APLCDICQERKGYFFCLEDRALLCNECDGAIHicNSHQ 92
               689******99********************8546687 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
CDDcd000211.29E-6347No hitNo description
SMARTSM003361.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1725396IPR000315B-box-type zinc finger
SMARTSM003361.0E-115396IPR000315B-box-type zinc finger
PfamPF006432.2E-75592IPR000315B-box-type zinc finger
CDDcd000219.43E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI QVHEANKLFQ RHHRVPLQKN TASGAPLCDI  60
CQERKGYFFC LEDRALLCNE CDGAIHICNS HQRFLLSGVQ ASDQSESSGC STSFSFETYQ  120
IQSKASLNSQ YSSEETEAGN SGETGKNPSV ILSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g07210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533411e-141AK353341.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654798.17e-95B-box zinc finger protein 23-like
SwissprotO826176e-90BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A3P5Y0G44e-94A0A3P5Y0G4_BRACM; Uncharacterized protein
STRINGBostr.25463s0295.1.p2e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.12e-83DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]