PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g07070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 39428.8 Da PI: 7.457 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + Tp6g07070 9 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRN-SY 106 69****************************.99**************964444222455*************************************9.89 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfykgrap+g+ktdW+mheyrle Tp6g07070 107 KKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138 99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-60 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.126 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYHKFEMEV IREVDLNKLE PWDLQERCKI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120 RAPHGQKTDW IMHEYRLEDA DDSQGDPSED GWVVCRVFMK KNLFKVVNEG GSSINSTDQY 180 NHDASNNNNN TLQARSFMHR DSPYQLVRNH GATTFELNKP DLALHQYPPI FHKPSSLGFD 240 YSSGLTRDGE SAASEGLQYR QACEPGLEVG TCETVASHHN HQQGLGEWSM MDRLVTCHLR 300 NEESSRGIRF EDANNNSSSV VEPVPATTNQ LSLRSEMDFW GYSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g07070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133681 | 0.0 | AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475542.1 | 0.0 | PREDICTED: protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 0.0 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A397ZYP7 | 0.0 | A0A397ZYP7_BRACM; Uncharacterized protein | ||||
STRING | Bostr.25463s0283.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 0.0 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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