PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g06270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 309aa    MW: 34044 Da    PI: 4.6725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g06270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20101150255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdps    r  r +lg+f+taeeAa  +++a+ +l+g
  Tp6g06270 101 KYRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTFDTAEEAAIVYDNAAIQLRG 150
                8********.**********84....34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-31100158IPR001471AP2/ERF domain
CDDcd000181.27E-33101158No hitNo description
SMARTSM003801.1E-38101164IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22101158IPR016177DNA-binding domain
PfamPF008471.1E-12101150IPR001471AP2/ERF domain
PROSITE profilePS5103224.026101158IPR001471AP2/ERF domain
PRINTSPR003677.0E-11102113IPR001471AP2/ERF domain
PRINTSPR003677.0E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKTEKKVIKL TEHKLKSTTT TITQPRILRI SVTDPYATDS SSDEEEDFAE ISRKRRRVKK  60
FVNEVVLEST ISDKDRPKKK KKRLNTTMAT VEAAVSAPVR KYRGVRQRPW GKWAAEIRDP  120
SRRVRLWLGT FDTAEEAAIV YDNAAIQLRG PDALTNFAPP ATENGEEASK ETDGISDLTT  180
SGGREFLDSP VSVLQSPFSG ASTEVITVKE EISRVSTVTS EIKEEPSITV SDTFTDFSAP  240
LFSDDDVFSF PTSMPDCFGG DLFGDDLLAD MSFGFGFGSG SGSGFSSWHV EDHFQDIGDL  300
FGSDPLLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21100166470ATERF1
3gcc_A5e-21100166470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256RKRRR
25259RKRRRVKK
35357KRRRV
47480DRPKKKK
57683PKKKKKRL
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g06270
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740851.11e-149ethylene-responsive transcription factor CRF1-like
SwissprotO825031e-113CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P6AUH41e-148A0A3P6AUH4_BRAOL; Uncharacterized protein
STRINGBo3g045150.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-98cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]