PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g05810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 374aa MW: 39589.8 Da PI: 4.5586 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 56 | 148 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ +++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++i+ Tp6g05810 56 FLTKTYQLVDDPVYDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRDIQ 143 9*****************************************************************99.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Tp6g05810 144 RRKIS 148 **865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.1E-57 | 52 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.84E-34 | 53 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.6E-37 | 53 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-31 | 56 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 56 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 95 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 107 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 6.3E-4 | 224 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGAGGGGG GGGGGGDSQR SIPTPFLTKT 60 YQLVDDPVYD DLISWNEDGS TFIVWRPAEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV 120 PDRWEFSNDC FRRGEKILLR DIQRRKISQP AMAAAAAAAA AAVAASAVTV AAVPVVAHAV 180 SPSNSGEEQV ISSNSSPAAA AAASGGGPVG VVLQRTTSCT TTPELIEENE RLRKENLQLS 240 QELTKLKGLY SNIYTLMANF TSGQSDCANL LPEGRPLDLL PERQGMSEAM EMASRIETGI 300 GLKLDEDLTP RLFGVSIGVK RARRDEESGA AEEEDEERRE ACNRDGEQGS DVKSEPMEEN 360 NSDNHNGPWL ELGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 3e-27 | 56 | 145 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-27 | 56 | 145 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-27 | 56 | 145 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-27 | 56 | 145 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-27 | 56 | 145 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g05810 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396868.1 | 0.0 | heat stress transcription factor B-2b | ||||
Refseq | XP_024009823.1 | 0.0 | heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 1e-173 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | V4N026 | 0.0 | V4N026_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396868.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 1e-158 | HSF family protein |
Publications ? help Back to Top | |||
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