PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g05320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 361aa MW: 41470.4 Da PI: 8.3333 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.6e-05 | 113 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+++F +++ L +H r H Tp6g05320 113 YFCGVCDRRFYTNEKLINHFRQiH 136 78*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-5 | 31 | 113 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 4.48E-5 | 112 | 138 | No hit | No description |
PROSITE profile | PS50157 | 11.177 | 113 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 136 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.35E-12 | 168 | 265 | No hit | No description |
Pfam | PF01936 | 4.8E-7 | 173 | 266 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-5 | 198 | 266 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MFTRLVQRIR RSKTPITSLD SIKGFSSLNP KTTIRVAVFW DLDNKPPASF PPFDAAVKLR 60 TAASSLGFVK LMVAYANRHA FSYVPVEVRE ERKERKLLNQ LENKGLVKPP EPYFCGVCDR 120 RFYTNEKLIN HFRQIHETEN QKRMRQIESA KGHQKVRLVA KYSMKMEKYK RAARNIVTPK 180 EGYGLAEELK RAGFWVKMVS DKPEAADRAL KEHMVEVMDK REVECVVLVS DDSGFAEILW 240 EAKERCLRTV VIGDLNEGAL KRVADVAYSW KEVVMGKAKK EVEKVVGKWK DRDVLKKLEW 300 TYDPALEKAR GSSCGVWDYE FDSDDDEIEN GTEVESVETG DGGDWWEMDD EDGVGSSRPC 360 R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g05320 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396784.2 | 0.0 | uncharacterized protein LOC18014417 | ||||
TrEMBL | A0A1J3JFS6 | 0.0 | A0A1J3JFS6_NOCCA; Uncharacterized protein | ||||
STRING | Bostr.25463s0088.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11444 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 0.0 | C2H2 family protein |