PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g05240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 32088.2 Da PI: 6.7818 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ + + G +W++ ++ g++R++k+c++rw +yl Tp6g05240 14 KGPWTAEEDKKLINFIMKNGHCCWRALPKLAGLHRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ Tp6g05240 71 SDAEEQLVIDLHALLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 778***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.924 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.03E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.214 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 71 | 112 | No hit | No description |
Pfam | PF00249 | 2.9E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRQPCCDKL GVKKGPWTAE EDKKLINFIM KNGHCCWRAL PKLAGLHRCG KSCRLRWTNY 60 LRPDLKRGLL SDAEEQLVID LHALLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKME 120 IDPRTHQPLM QVSTEIKSID RSKTSSKAAN VKRSDIKSIE IDGTTMNSTD ESSTITHQNV 180 PTHDYELLGN IIHNDDDLFN ILWTNDEPHL VDASWRNCNV DVGRSAAEKI GEDFPTWPSE 240 EKNVESWMFL DYCQDFGVQD FGLECYHDFG QSSTETGHKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g05240 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396775.1 | 1e-173 | protein ODORANT1 | ||||
Swissprot | Q50EX6 | 2e-87 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | V4LEM9 | 1e-172 | V4LEM9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396775.1 | 1e-173 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12350.1 | 1e-158 | myb domain protein 42 |
Publications ? help Back to Top | |||
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