PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g04460
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 521aa    MW: 57247.4 Da    PI: 6.9024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g04460genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.1e-31282340259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Tp6g04460 282 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 340
                8*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-34266342IPR003657WRKY domain
SuperFamilySSF1182902.88E-28274342IPR003657WRKY domain
PROSITE profilePS5081129.838276342IPR003657WRKY domain
SMARTSM007743.6E-38281341IPR003657WRKY domain
PfamPF031065.6E-27282340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MFRFPVSLGG SHDNPKQPQP SDEQNHRAMM DEVDFFRSEK RDDQNIITDQ TDRVHVKREK  60
LRVVDDDDDR STGINTGLNL LTANTGSDES MVDDGLSVDM EEKRTKSENA QLREELKKMA  120
EDNQRLKEML SQTTNNFNSV QMQLVSVMRQ QEDHHHLATT ERKDKANKRH EAPEIVPRQF  180
IDLGVPSAEV SSEERTTVRS GSPPSLLENS GSGQRGKRIR EREESPETES NGWGNPNNIS  240
KHKVSSTNCN GNGNAIDQSA AEATMRKARV SVRARSEAPM LNDGCQWRKY GQKMAKGNPC  300
PRAYYRCTMA VGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAMYMAS TTTAAASMLL  360
SGSTMSSQEG LMNPSNLLAR TMLPCSSSMA TISASAPFPT ITLDLTESAS NVNSPTNNNP  420
LMQFSQRPGF AELNQSGLSQ MMGQALYYNQ QQSKFSGLEI PSQSLNAGES VTASTAAIAA  480
NPNFAAALAA AITSIINGSN NHQNRNNSSN SNVRTSSVDR Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23268344176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g04460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841100.0FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473199.10.0PREDICTED: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLC5H9Z50.0C5H9Z5_BRANA; WRKY transcription factor 42
STRINGBo3g048600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein