PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g01460
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 430aa    MW: 48573.9 Da    PI: 6.6493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g01460genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.36.1e-4061353128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                +G+rF Pt eel+++yLk+k+ +++  ++++i+e++i+++eP +Lp  +k+++++  wyfFs+++ ++a++k  +r+t sg+Wkatg d++++++  +g 
  Tp6g01460   6 VGYRFCPTGEELINHYLKNKILDRSWLVDDAISEINICSYEPISLPplSKLESKDLVWYFFSPKEYTSAKKKVIKRTTPSGFWKATGVDRKIKDRrgNGV 105
                7************************999999**************96558888888**************************************977778 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                ++g+kktLv++kg+a++g+ t Wvmhey++
  Tp6g01460 106 EIGIKKTLVYHKGKASNGVGTPWVMHEYHI 135
                8***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.9844153IPR003441NAC domain
PfamPF023653.8E-236135IPR003441NAC domain
SuperFamilySSF1019411.83E-446153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEKDLVGYRF CPTGEELINH YLKNKILDRS WLVDDAISEI NICSYEPISL PPLSKLESKD  60
LVWYFFSPKE YTSAKKKVIK RTTPSGFWKA TGVDRKIKDR RGNGVEIGIK KTLVYHKGKA  120
SNGVGTPWVM HEYHITCLPL HQRTYVICQV MYKGKDGDIL YGNNTTKPSH SMVSDSNTFR  180
AVHTTAPEVE LPDEEDSDGL SVNELLIPMN QQEDLYQCDG FNPNTILSDN NPYMQPQTPY  240
DNEYFLGLLS FNGGNFEDVI PYPELIMQEN HNDHRPKKPL SGIIVDYSSD SDAESISATS  300
YQGISSPGDS VGSSNRHFPR CSSTDSFKHL QTSADPSINT KSEESQLTRQ TVPSKQEVKE  360
GKSKAIDASM YKKSSSVLKT EKKNWIITEE ATERNHKNPR YIYLMNMIIG FILLVAVIGN  420
IMSVLRSLIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-23713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g01460
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444884.10.0PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A1J3D0190.0A0A1J3D019_NOCCA; NAC domain-containing protein 69 (Fragment)
STRINGBra008553.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]