PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00520
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 562aa    MW: 64059.2 Da    PI: 7.1309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.4e-053794161355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R++ N++f+ Lr ++P  +       ++K +iL  +++Y+++L+
  Tp6g00520 379 RRKENEKFSVLRAMVPVvN------EVNKESILNNTIKYLQELE 416
                6777*************55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-5123220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.674366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-7372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-8379426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-8379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MSLTMADGVE AARGRSKRKN SLLRAQLAVA VRSVQWSYAI FWSSSPTQSG VLEWGEGCYN  60
GDMKKRKKRY EAHYKYGLQR SNQLRKIYLC MLEGDSSTTI STTHDVDDHS DDGDHHNCNS  120
TSMMLSPDDL SDEEWYYLVS MSYVFSPSQC LPGRALATGE TIWLCNAQYA ENKLFSRSLL  180
ARSASIQTVV CFPYLDGVVE LGVTELISED HSLLQHIKSC LLETSKPDCS SKNFSVHQDN  240
DDEKNKMKIK ISDGNSMLQE NHQIQFSSSD LKFDEDLHYK RTVSTVLKYA TDKSKRNDNN  300
THHRQPDLVS SNSGSSFLQW KQREQPNSNL LQKHSNLQAL SQKVLRKILH DIPLMHALDT  360
KRMFPNQIFG LNQDDPSDRR KENEKFSVLR AMVPVVNEVN KESILNNTIK YLQELEERVE  420
ELESCMGSVN FVERKRKTTK SLNDSVLIEE TSGNYEDNTK IDGYSGETEQ VSNFRDQTHL  480
RVKLKETEVV IEVKCSYRDY IVADIMETLS KLHMDAFSVR SHTLDGSLTL NLKAKLRGAA  540
VASVGMIKRE LRRVIGEGMR IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-142422112192Transcription factor MYC3
4rqw_B7e-142422112192Transcription factor MYC3
4rs9_A7e-142422112192Transcription factor MYC3
4yz6_A7e-142422112192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00520
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010505.10.0transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLV4L2300.0V4L230_EUTSA; Uncharacterized protein
STRINGXP_006396246.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein