PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 585aa    MW: 64416.6 Da    PI: 5.8136
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.73.8e-992175822374
       GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                +e+Ll++Ae+++s gd+ laq +Larl+++ +sp g+p++R+a+yf+eAL++ +++         + +  ++++ + ++aa+k fse+sP+l+f+++t N
  Tp6g00220 217 TEQLLKAAEVIESgGDTCLAQGILARLNQQlSSPLGKPFERAAFYFKEALHNCILH-------NASQTLLNPYSLIFKIAAYKSFSEISPVLQFANFTSN 309
                689*********978999**********998************************9.......334445556779************************* PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.......pp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                qa+le+++g +r+HiiDfdi++G+QW++L+q+L  R+++       pp sl+iT+++++++   ++ el  t+++L++fA+e++++++++vl   +l+ l
  Tp6g00220 310 QALLESFNGFHRLHIIDFDIGYGGQWASLMQELVLRENNnsnndaaPPiSLKITVFEKASPAthEQLELGFTQDNLKHFASEINISLDIQVL---SLDLL 406
                ************************************9444555666556********9888877899999*********************9...55555 PP

       GRAS 190 .eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 +++  + +++Ea+aVnl+ + ++ +      +s+ + vL++vk+lsP+++v++++ +++++ +F +++l++l+ ++al++sl+a   ++ ++++k+Er+
  Tp6g00220 407 gTVSWPNSSEKEAVAVNLSAASFSNM------PSYLPLVLRFVKHLSPTIIVCSDRGCERTDLPFPQHLLHSLQSHAALLESLDAV-NANLDAMQKIERF 499
                2233446778********99776654......788889*********************************************887.56779******** PP

       GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                l+++ei+++v  + +      + +++W++++ ++GF+pv+ s+++++qa++l+++++++g++ve++++sl+l+W++r+Lv vSaWr
  Tp6g00220 500 LIQPEIEKLVVDRSRP---IDRPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRRELVGVSAWR 582
                ************9998...77889*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.721191562IPR005202Transcription factor GRAS
PfamPF035141.3E-96217582IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MPLAFDEFQG KGISYFSSFP SSSFSSDKEP TSVLSPLTTS SSTVSSSHGA NSAVGGALSG  60
GGEPTTTDEQ CRAMGLGDWE QVLPASSPTH DHDEHDQSIL RLIMMGGDSQ DPSLELNNIL  120
LQTSSSSQSS ASFDYTFDST GFGVDHSVPP LFQSQAEEKP PHHHLPSLLI NQSQTLFTQN  180
PSLFYGHHIP ATLPPAKRLN QGPAVGYPDP TKQGMITEQL LKAAEVIESG GDTCLAQGIL  240
ARLNQQLSSP LGKPFERAAF YFKEALHNCI LHNASQTLLN PYSLIFKIAA YKSFSEISPV  300
LQFANFTSNQ ALLESFNGFH RLHIIDFDIG YGGQWASLMQ ELVLRENNNS NNDAAPPISL  360
KITVFEKASP ATHEQLELGF TQDNLKHFAS EINISLDIQV LSLDLLGTVS WPNSSEKEAV  420
AVNLSAASFS NMPSYLPLVL RFVKHLSPTI IVCSDRGCER TDLPFPQHLL HSLQSHAALL  480
ESLDAVNANL DAMQKIERFL IQPEIEKLVV DRSRPIDRPM MTWQAMFLQM GFSPVTHSNF  540
TESQAECLVQ RTPVRGFHVE KKHNSLLLCW QRRELVGVSA WRCRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2625258237375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0363030.0AF036303.1 Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds.
GenBankAF4628310.0AF462831.1 Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds.
GenBankAK1172980.0AK117298.1 Arabidopsis thaliana mRNA, clone: RAFL16-86-D11.
GenBankAL1614710.0AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1.
GenBankAY1335370.0AY133537.1 Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF6N150.0AF069299.1 Arabidopsis thaliana BAC F6N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396213.10.0scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A087GL400.0A0A087GL40_ARAAL; Uncharacterized protein
STRINGA0A087GL400.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]