PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 24282.7 Da PI: 6.1765 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 139 | 180 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + rrRR+ri +++ L++++P a K++ a++L +A++Y k L Tp6g00190 139 VARRRRERISEKIRILKRMVPGgA------KMDTASMLDEAIRYTKFL 180 569******************966......**************8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.335 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-13 | 136 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-12 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-13 | 137 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.89E-10 | 137 | 185 | No hit | No description |
Pfam | PF00010 | 3.8E-6 | 140 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MYKRKVYASL VQKLYMSDSK ADAAITPIVM MEPHHLLMNW SKPNDLITQE YPFHHDPHLM 60 IDPPPETLSH FQSPPTLFSD HGGGGEEEEE EEEEEEEMDA MKEMQYAIAA MQPVDIDPAT 120 VPKPNRRNVR VSDDPQTVVA RRRRERISEK IRILKRMVPG GAKMDTASML DEAIRYTKFL 180 KRQVRLLQPH SQLGAPISDP SCLCYYHTSH T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker. {ECO:0000269|PubMed:15035986}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g00190 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FUL, which restrict its expression to the margins. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU386357 | 0.0 | GU386357.1 Brassica rapa subsp. pekinensis bHLH transcription factor (BraA.IND.a) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458940.1 | 1e-107 | PREDICTED: transcription factor IND | ||||
Swissprot | O81313 | 4e-84 | IND_ARATH; Transcription factor IND | ||||
TrEMBL | A0A3P6B2H7 | 1e-117 | A0A3P6B2H7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g054830.1 | 1e-106 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4449 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 2e-71 | bHLH family protein |