PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g35920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 743aa    MW: 83227.9 Da    PI: 6.6986
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g35920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29e-2196151156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r+k +++t++q++ +e+lF+++++p++++r++L+++lgL  rqVk+WFqNrR++ k
  Tp5g35920  96 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSRQLGLAPRQVKFWFQNRRTQIK 151
                7999************************************************9877 PP
2START227.83.2e-712554822206
                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                +a++a+ el+k+a+a++p+W +s     e++n+de+l++f+++++      +s+ea+r++g+v+m++++l ++++d++ qW+e++a    ka+t++vi++
  Tp5g35920 255 IANRATLELQKMATASQPLWLRSLetgrEILNYDEYLKEFPQAQAsslhgrKSIEASRDVGIVFMDAHKLAQSFMDVG-QWKEMFAclisKAATVDVIRQ 353
                6789999************************************99*********************************.********************* PP

                T.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
      START  88 g.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv++e++++   ++s+ +++++pSg++ie++snghskvtwveh d++++++
  Tp5g35920 354 GegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSVEEENNMekEASLLKCRKRPSGCIIEDTSNGHSKVTWVEHLDMSASMV 453
                *****************************************************99999889*************************************** PP

                HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 178 hwllrslvksglaegaktwvatlqrqcek 206
                + l+rs+v++gla+ga++wvatlq +ce+
  Tp5g35920 454 QPLFRSFVNTGLAFGARHWVATLQLHCER 482
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2281147IPR009057Homeodomain-like
SuperFamilySSF466891.75E-1988154IPR009057Homeodomain-like
PROSITE profilePS5007117.81593153IPR001356Homeobox domain
SMARTSM003891.7E-1795157IPR001356Homeobox domain
PfamPF000464.2E-1896151IPR001356Homeobox domain
CDDcd000865.46E-16100151No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084842.662245485IPR002913START domain
SuperFamilySSF559613.3E-30248482No hitNo description
CDDcd088756.07E-105249481No hitNo description
SMARTSM002342.5E-80254482IPR002913START domain
PfamPF018523.8E-64255482IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-7308480IPR023393START-like domain
SuperFamilySSF559614.05E-16511729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGTEED FVGRRVVDEE DRTVEMSSEN  60
SGPTRSRSEE DLEGEEDQEE EEEEDGAGNK GNKRKRKKYH RHTTDQIRHM EALFKETPHP  120
DEKQRQQLSR QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKAELEKLR EENKSMRESF  180
SKASSSCPNC GGEGPNDLHL ENSKLKAELD KLRTALGRSP YPLQASCSDD QQHRPGSLEF  240
YTGVFALEKS RIADIANRAT LELQKMATAS QPLWLRSLET GREILNYDEY LKEFPQAQAS  300
SLHGRKSIEA SRDVGIVFMD AHKLAQSFMD VGQWKEMFAC LISKAATVDV IRQGEGPSRI  360
DGAIQLMFGE MQLLTPVVPT REVYFVRSCR QLSPEKWAIV DVSVSVEEEN NMEKEASLLK  420
CRKRPSGCII EDTSNGHSKV TWVEHLDMSA SMVQPLFRSF VNTGLAFGAR HWVATLQLHC  480
ERLVFFMATN VPTKDSIGVT TLAGRKSVLK MAQRMTQSFY RAIAASSYHQ WTKITTKTGQ  540
DMRVSSRKNL HDPGEPTGVI VCASSSLWLP ISPTLLFDFF RDESRRHEWD ALSSGANVQS  600
IASLSKGQDR GNSVSIQTVK SREKSTWVLQ DSCTNSYESV VVYAPVDINT TQLVIAGHDP  660
SNIQILPSGF SIIPDGVESR PLVIMSTQED RNTQGGSLLT LALQTLINPS PAAKLNMESV  720
ESVTNLVSVT LHNIKRSLQI EDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g35920
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565223.10.0HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A178WBY60.0A0A178WBY6_ARATH; GL2
STRINGAT1G79840.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]