PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g35190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30948.8 Da PI: 9.4048 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.4e-21 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+ +l+g Tp5g35190 132 GYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 181 8********.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-21 | 132 | 189 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-31 | 132 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.827 | 132 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-15 | 132 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-17 | 133 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-29 | 133 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MENTVDGHRL HLSIPLSSAV ETHQSVETYG FYKETPSVCM PFFEAKTPFS NLTVAEPFNG 60 HDSFDISSLI FSHDPNPVPV SPRRVMDDSI AAVVGENVLF GNNNNKVFDH FTATQTEDGV 120 KRWRKMPQKN GGYRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEEAAR AYDAAAMRLR 180 GTKAKTNFVV PTVFPEEVAQ TQSSTTEEDR RRKKKQRVNV RKCVKVTSVA QLFSDTTSTL 240 TSSSNDGNVI SPSDNLEKMG LELDLKLGLG LFRNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 124 | 188 | 6 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 216 | RRKKKQR |
2 | 211 | 221 | RKKKQRVNVRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g35190 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022553817.1 | 1e-156 | ethylene-responsive transcription factor ERF084-like | ||||
Swissprot | Q9M8M5 | 3e-87 | ERF84_ARATH; Ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | A0A078HPH5 | 1e-154 | A0A078HPH5_BRANA; BnaC02g22960D protein | ||||
STRING | Bra008460.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-80 | ERF family protein |