PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g35020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 227aa    MW: 25689.1 Da    PI: 10.7893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g35020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176688123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  Tp5g35020 66 FSCNYCQRKFYSSQALGGHQNAH 88
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-66393No hitNo description
PROSITE profilePS5015711.1776693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPSIRGDQE MSKTKKRGHQ DLELCLTLLP RGTTSSELNL INSFNTSSPT TSRRRHQEHL  60
EDPRVFSCNY CQRKFYSSQA LGGHQNAHKR ERILAKRGQY YKMSISSSSP SAAFAFGHGS  120
VSRFASLASL PLHGSANNRS TLEIQAHSTI HNPFLGRQTA NLSHVFKQSI HQKQTIRKML  180
PEKFHLEVAG SNNSNNIIAP KLERLGHFKS KQEDHNQFKK IDLTLKL
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g35020
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHZFPA0.0L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds.
GenBankATU535010.0U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds.
GenBankBT0264060.0BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF23A50.0AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178188.11e-123zinc-finger protein 1
SwissprotQ424851e-125ZFP1_ARATH; Zinc finger protein 1
TrEMBLA0A384KNY01e-122A0A384KNY0_ARATH; ZFP1
TrEMBLQ0V8141e-122Q0V814_ARATH; At1g80730
STRINGAT1G80730.11e-123(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-115zinc-finger protein 1
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]