PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g33210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 37607 Da PI: 7.1593 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 152 | 201 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Tp5g33210 152 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 201 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-33 | 151 | 211 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-32 | 152 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-23 | 152 | 210 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.169 | 152 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 152 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 153 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 153 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 175 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDLYSSRTIH QSDSFGGGEL MEALVPFIKS VSDSSSLLLP PPSASAFSLP TFPGYYPEDC 60 STFMTQPFSY GSDLQQTGSL IGLNNLSSSQ IHQIQSQIHQ SHAFPTPPTH HRLGHDSLSN 120 HLSPKPLLMK QSGVAGSCFA YGAGVPPKPT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG 180 TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHNGSHIGG EFGEYKPLHS TVDAKLEAIC 240 QSMAETQKQD KSTTKATKKR SSTVTQKKTE KVSLPEKVKA EENSNSVAGS PSATEFVESA 300 GSSPLSDLTF ADTEEQPQWN ETFSLEKYPS YEIDWDSILS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 151 | 209 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g33210 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352945 | 0.0 | AK352945.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-I08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390026.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 1e-175 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1J3DPF1 | 0.0 | A0A1J3DPF1_NOCCA; Ethylene-responsive transcription factor RAP2-4 | ||||
STRING | XP_006390026.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2716 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-134 | related to AP2 4 |
Publications ? help Back to Top | |||
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