PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g30820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 459aa    MW: 49626.1 Da    PI: 9.4199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g30820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-05200222223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 C+ Cg++Fs  ++L+ H+ + H
  Tp5g30820 200 ACSQCGEVFSKLESLELHQAVrH 222
                6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.224199227IPR007087Zinc finger, C2H2
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SuperFamilySSF563993.55E-20224455No hitNo description
Gene3DG3DSA:3.90.228.101.9E-13226455IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MALLTFLPEN AEPPKHTPPP SKRKKRENPT DQTQKPKPQK QKAIAPQKQP SSWDQIKNLL  60
TCKQIEGSRV HDPSKNSPST TTHLSPSKLG SSCSSICSFR DVAHGNTRVV HRADNSPDVA  120
NSATADSETR LLTRKPGQHG SSSSSRSLTS GSARSNTSGS YTSSSTTSFR AMQFRKLSGC  180
YECHMIVDPS RYPISPRVCA CSQCGEVFSK LESLELHQAV RHAVSELGPE DSGRNIVEII  240
FKSSWLKKDS PICKIERILK VHNTQRTIQR FEDCRDAVKA RALQTTRKDA RCAADGNELL  300
RFHCTTLTCS LGSRGSSSLC SNLPNCGVCN VIRHGFQGKS GAGGVIPTAT SSGGVRTTAS  360
SGRADDLLRC SDDARRVMLV CRVIAGKVKR VDLPATDSAA TEQKFPAEDN TSVGVSSSGG  420
VFDSVAVNAG VYSNLEELVV YNPRAILPCF VVIYKVLES
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g30820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428604.10.0PREDICTED: uncharacterized protein LOC104713223
TrEMBLA0A3N6RY120.0A0A3N6RY12_BRACR; Uncharacterized protein
STRINGXP_010428604.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein