PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g30620
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 200aa    MW: 21976.2 Da    PI: 6.3519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g30620genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-193382255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++ a++kl+g
  Tp5g30620 33 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 82
               69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.42E-313292No hitNo description
Gene3DG3DSA:3.30.730.102.2E-303391IPR001471AP2/ERF domain
SMARTSM003807.4E-353396IPR001471AP2/ERF domain
PROSITE profilePS5103221.9833390IPR001471AP2/ERF domain
PfamPF008474.3E-143382IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-213392IPR016177DNA-binding domain
PRINTSPR003676.8E-103445IPR001471AP2/ERF domain
PRINTSPR003676.8E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MMVGANKKQR TVQASSRKGC MRGKGGPENA SCTYKGVRQR TWGKWVAEIR EPNRGARLWL  60
GTFDTSREAA LAYDSAARKL YGPEAHLNLP ESLRTKPETA SPGTHVSQTP SSNTGGKSSD  120
SVNDSSPCSS NEMSSWGTRQ EISWEHMNVD LPITDDSSIW EEATMSLGFP WVHEGDDDIS  180
PFNTCISGGY TNWDSFHSPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-183490360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-173490663ATERF1
3gcc_A1e-173490663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g30620
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064340.0AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237540.0AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAK1191320.0AK119132.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-48-H08.
GenBankAK1759020.0AK175902.1 Arabidopsis thaliana mRNA for transcription factor DREB2A like protein, complete cds, clone: RAFL22-54-M24.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104705.11e-128PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_013737432.11e-128dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-116DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A397YQE11e-127A0A397YQE1_BRACM; Uncharacterized protein
TrEMBLM4CHR91e-127M4CHR9_BRARP; Uncharacterized protein
STRINGBra003752.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-116ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]