PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g30580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 289aa    MW: 32883.5 Da    PI: 5.6675
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g30580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-102202581854
                HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                lF+   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Tp5g30580 220 LFQHflHPYPNDAEKLMLASQTGLSKNQVSNWFINARVR 258
                5775569******************************98 PP
2BELL99.13.4e-3281152172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e +el++k++kLlsll++V++r+  y++ql++vissFe++ag +s+k+Yt lAl+a++rhF +L++ai +q+
  Tp5g30580  81 ETHELHIKITKLLSLLQKVEERFDIYCNQLEQVISSFEEIAGEESSKVYTGLALQAMTRHFGSLQEAILSQL 152
                679******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-1011150IPR006563POX domain
PfamPF075261.1E-2719148IPR006563POX domain
SMARTSM003894.3E-10202266IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-28207268IPR009057Homeodomain-like
CDDcd000861.67E-11208263No hitNo description
SuperFamilySSF466893.94E-18208271IPR009057Homeodomain-like
PfamPF059208.5E-18219258IPR008422Homeobox KN domain
PROSITE profilePS5007111.823221262IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEFRVSHEF SSLTSIPLDS RYVKAVRCLV EEVIDIGGRE VELCNDILIQ QLFPGRRRSG  60
FGLSSEIKSE LCSSGFMSLP ETHELHIKIT KLLSLLQKVE ERFDIYCNQL EQVISSFEEI  120
AGEESSKVYT GLALQAMTRH FGSLQEAILS QLNSLRRRFI ISQDVVPKII SSGLSQLSLF  180
DGTASTSLQR LGLVQGPQRH AWKPIRGLPE TSVAILRAWL FQHFLHPYPN DAEKLMLASQ  240
TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREGNDDSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-17208269566Homeobox protein Meis2
3k2a_B1e-17208269566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g30580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464320.0DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390303.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLV4K9880.0V4K988_EUTSA; Uncharacterized protein
STRINGXP_006390303.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11