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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g30550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TALE | ||||||||
Protein Properties | Length: 527aa MW: 59425.6 Da PI: 6.4158 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.7e-10 | 372 | 409 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + Tp5g30550 372 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 409 665559******************************88 PP | |||||||
2 | BELL | 125.9 | 1.5e-40 | 235 | 306 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vaglg+akpYts+Al++iSrhFrcL+dai+eqi Tp5g30550 235 ERQELQSKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVAGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 306 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.2E-53 | 166 | 304 | IPR006563 | POX domain |
Pfam | PF07526 | 2.0E-48 | 172 | 302 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.422 | 350 | 413 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-10 | 353 | 417 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.88E-12 | 353 | 414 | No hit | No description |
SuperFamily | SSF46689 | 8.98E-18 | 354 | 421 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 356 | 419 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.5E-18 | 370 | 409 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MAVYYPTTVG MQSLYQESIY LNEQQQQASS SSAASFSDIV SGGGGGGGNC LEIPNSGGGV 60 RNEMVFIPPT SDDVVVTGLN GNVNGTVTVS NNDLSFHGGG LSLSLGNQIQ YHYQNLYNNQ 120 NPSLSDENGK SLSHHHQHHQ SEQIPIPSSG YSNGVGFYNN YRYETSGFVS SVLRSRYLKP 180 TQQLLDEIVS VRKDLKLGDS NKKSKNNDKS QDFTNGSSDN NTENEKLREE LSPSERQELQ 240 SKKSKLLTMV DEVDKRYNQY HHQMEALASS FEMVAGLGAA KPYTSVALNR ISRHFRCLRD 300 AIKEQIQVIR GKLGERESSE EQGERIPRLR YLDQRLRQQR ALHQQLGMVR PAWRPQRGLP 360 ENSVSILRAW LFEHFLHPYP KESEKIMLAK QTGLSKNQVA NWFINARVRL WKPMIEEMYK 420 EEFGDSSELV SNSNQDNKMQ ETSLLKQEDS SSSQQQNHGN NNVPYTSDAE ENLVFADPKP 480 DRATTGDYDS LMSYNGFGVD DYNRYIGLGN QQDGRFSNPH QLHDFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 3e-16 | 359 | 416 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 359 | 416 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g30550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF353093 | 0.0 | AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds. | |||
GenBank | AY062545 | 0.0 | AY062545.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410; F1B16.6) mRNA, complete cds. | |||
GenBank | AY085278 | 0.0 | AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence. | |||
GenBank | AY598452 | 0.0 | AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds. | |||
GenBank | BT000133 | 0.0 | BT000133.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390306.1 | 0.0 | BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 0.0 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | V4KK10 | 0.0 | V4KK10_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390306.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 0.0 | BEL1-like homeodomain 3 |
Publications ? help Back to Top | |||
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