PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g30480
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 371aa    MW: 40717.9 Da    PI: 8.4728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g30480genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12326327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                elCr+f+r G C+yG+rCkF H++
  Tp5g30480  3 KELCRNFQR-GDCRYGERCKFLHPQ 26
               69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.568127IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5227IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-8326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MRKELCRNFQ RGDCRYGERC KFLHPQQAKP NNPFGFGTQS RDQQQQQQKS PNPFGFGDSN  60
SSRPNQFQNT WQRNPSTPAA GASSTQQTGK QTQQADHKCT DPAACKRVMQ EDFKNERPMW  120
KLTCYAHWKY FPCDVTGDIS YEELRAMAYD EAKRGIPLQS IVERERNLQN SKVAEFENFL  180
RNPYRGTVTA NQSPFAAPTP GIFPPASQGN SPPAFSGFNQ QPAFPNTNAG VVSSSGPPNP  240
FGRFNQQPNA FSVNTPQAVP SGPSGFQSQP SVTFKPASFG PGPGLATAPQ NSNIFPSISP  300
TPAPNNSQNN QTAFNFNSPV ASFTAPVIDT SNTSSGTELQ AEGAPVDTSI WLKEKWKIGE  360
IPEQAPPDEF I
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g30480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012531.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLV4JQW50.0V4JQW5_EUTSA; Uncharacterized protein
STRINGXP_006390319.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.20.0C3H family protein