PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g29660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Nin-like
Protein Properties Length: 292aa    MW: 33350.7 Da    PI: 5.7183
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g29660genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.34.7e-26126176252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl
  Tp5g29660 126 SKALSMETISRYFYMPITQAALELNVGLTLLKRRCRELGISRWPHRKLMSL 176
                689*********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.154116198IPR003035RWP-RK domain
PfamPF020422.2E-21129176IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADHKLKEET PFSFLTHSPS FDDHSSLTYP SFEWEEEFLP LHNNSAFQAF PLPTTPSLPL  60
PDLEPLSQDV LDSYSSASWN ETEQNRGDGD MEKNSEQEKT KKRKINREHS VTIISDITTY  120
TTSSASKALS METISRYFYM PITQAALELN VGLTLLKRRC RELGISRWPH RKLMSLLTLI  180
SNVKELQKME GEENAGKLKV ALEMLEKEKR MIEEFPDLEF EDKTKRLRQA CFKATHKRKK  240
KRSLKSDQTK MSIPSCSSSG SVVSEESVNE EGVESDEEVK YLLCGFTSVF SG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00234DAPTransfer from AT1G74480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g29660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390420.11e-164protein RKD2
SwissprotQ9CA661e-140RKD2_ARATH; Protein RKD2
TrEMBLV4M9831e-163V4M983_EUTSA; Uncharacterized protein
STRINGBostr.3288s0094.1.p1e-164(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.11e-105RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]