PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g29660

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 292aa MW: 33350.7 Da PI: 5.7183

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g29660	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.3	4.7e-26	126	176	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Tp5g29660 126 SKALSMETISRYFYMPITQAALELNVGLTLLKRRCRELGISRWPHRKLMSL 176 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	116	198	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-21	129	176	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MADHKLKEET PFSFLTHSPS FDDHSSLTYP SFEWEEEFLP LHNNSAFQAF PLPTTPSLPL 60 PDLEPLSQDV LDSYSSASWN ETEQNRGDGD MEKNSEQEKT KKRKINREHS VTIISDITTY 120 TTSSASKALS METISRYFYM PITQAALELN VGLTLLKRRC RELGISRWPH RKLMSLLTLI 180 SNVKELQKME GEENAGKLKV ALEMLEKEKR MIEEFPDLEF EDKTKRLRQA CFKATHKRKK 240 KRSLKSDQTK MSIPSCSSSG SVVSEESVNE EGVESDEEVK YLLCGFTSVF SG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g29660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390420.1	1e-164	protein RKD2
Swissprot	Q9CA66	1e-140	RKD2_ARATH; Protein RKD2
TrEMBL	V4M983	1e-163	V4M983_EUTSA; Uncharacterized protein
STRING	Bostr.3288s0094.1.p	1e-164	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-105	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]