PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g29630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 291aa MW: 33437.9 Da PI: 7.1865 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.4 | 3.4e-22 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+ snr+vt++kRr gilKKA+ELS+LCd+++ +++fs+tg+ Tp5g29630 9 KRLESISNRKVTYTKRRSGILKKAKELSILCDIDIVLLMFSPTGR 53 688999*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.48E-22 | 2 | 57 | No hit | No description |
SuperFamily | SSF55455 | 1.16E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-19 | 12 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRVKLMIKR LESISNRKVT YTKRRSGILK KAKELSILCD IDIVLLMFSP TGRPTIFHGD 60 HRCIGDVIAK FAQLTPQERT KRKLESLEAL KKTFMKLDHD VNIHEFLGAR NQTIEGLTNQ 120 VAFFQAQVLE CHRRLSCWAN IGRIENMEHL ANLEESLRKS IDRIQVHKIS SPLSIKDIQE 180 NHSLSWLPCN NNQQMIIPGD SSFIPHRDMA DRAAASLSVY SSFFESGNQE DQICNLEQQF 240 DHLRQEGNVF EPGLQEEKEF GPDHHHQTWI SDSSCCSNSA YRHSDNNQQP D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g29630 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428431.1 | 1e-132 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q7X9I0 | 1e-124 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | D7KH66 | 1e-124 | D7KH66_ARALL; AGL102 | ||||
STRING | XP_010428430.1 | 1e-129 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-126 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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