PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g29600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 26393.6 Da PI: 5.0306 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.7e-17 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++ + +lG++ W++Ia+ m +Rt++++k++w++ Tp5g29600 26 RGKFTPQEEEDIIKFHSLLGNR-WAAIAKQML-NRTDNDIKNHWNSC 70 89********************.********9.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.391 | 1 | 20 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.57E-20 | 6 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 6 | 31 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.265 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-15 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 26 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-10 | 28 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 32 | 75 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQKGLQRCGK SCRLRWLNYL RPGIKRGKFT PQEEEDIIKF HSLLGNRWAA IAKQMLNRTD 60 NDIKNHWNSC LKKRLFRSGI DPMTHEPIVP VVTSSSTTSS PTPTPSSSSS SSSFSSTGSA 120 RLLNKLAAEI SSRKHGLDRI KTVILSEPRQ AIEEEKITTI SKEEEEEEDE DVIACFMEID 180 ENLISTTSFD ELPCDSTTTI GFTAAFDDYS SIQPYDLYKS DFYQNTYDDP FLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 7 | 75 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g29600 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738285 | 1e-137 | KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390428.1 | 1e-119 | transcription factor MYB106 | ||||
Swissprot | O64399 | 6e-41 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | V4K9J5 | 1e-117 | V4K9J5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390428.1 | 1e-118 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 2e-84 | myb domain protein 95 |