PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g28290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 729aa MW: 79544.7 Da PI: 6.7635 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 33 | 88 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p+ ++r +L+++lgL rq+k+WFqNrR++ k Tp5g28290 33 KKRYHRHTAQQIQRLESSFKECPHPDDKQRNQLSRELGLAPRQIKFWFQNRRTQLK 88 688999**********************************************9877 PP | |||||||
2 | START | 162 | 4.4e-51 | 234 | 454 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 +a+ a++el+++ +ep+W++ +++n + f++s + ++ea+r sg+v+m+++ lv ++d + +W e ++ + +tl+vissg Tp5g28290 234 IALNAMEELLRLLHTNEPLWTRTDgcrDILNLGSYENVFPRSSNrgknhnITVEASRSSGIVFMNAMSLVDMFMDGA-KWAELFPsivaASKTLAVISSG 332 68899******************9999999999999999998889999999**************************.*******99999********** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHH CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwl 180 gal+lm+ e+ +lsplv+ R+f +Ry++q ++g+w++v vS +q+++ +s++ R +pSg+li++++ng+skvtwveh++ +++ p h+l Tp5g28290 333 mggtheGALHLMYEEMEVLSPLVAtREFCDLRYCQQIEQGSWIVVNVSYHLPQFVS-QSHSYR---FPSGCLIQDMPNGYSKVTWVEHIETEEKEPiHEL 428 ********************************************************.899999...********************************** PP HHHHHHHHHHHHHHHHHHHTXXXXXX CS START 181 lrslvksglaegaktwvatlqrqcek 206 +r ++++g+a+ga +wv tlqr ce+ Tp5g28290 429 YREMIHKGIAFGAERWVTTLQRMCER 454 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-20 | 14 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-22 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.026 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 31 | 94 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-17 | 33 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.46E-19 | 33 | 91 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.494 | 224 | 457 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-33 | 225 | 456 | No hit | No description |
CDD | cd08875 | 9.20E-105 | 228 | 453 | No hit | No description |
SMART | SM00234 | 1.1E-42 | 233 | 454 | IPR002913 | START domain |
Pfam | PF01852 | 3.8E-44 | 234 | 454 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.9E-9 | 279 | 453 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.87E-15 | 475 | 649 | No hit | No description |
SuperFamily | SSF55961 | 1.87E-15 | 677 | 716 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MSFVVGIGGS GSGSGGDGGG SQHHNGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDDK 60 QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNNALK AENDKIRCEN IAIREALRHA 120 ICPNCGGPPV SEDPYYDEQK LRIENAHLRE ELDRMSTIAS KYMGRPISSQ LSTLHPMHIS 180 PLDLSMTSLT GCGPGPSLDF DLLPGSSLPV APNSLHSQPN LAISDMDKPL MNDIALNAME 240 ELLRLLHTNE PLWTRTDGCR DILNLGSYEN VFPRSSNRGK NHNITVEASR SSGIVFMNAM 300 SLVDMFMDGA KWAELFPSIV AASKTLAVIS SGMGGTHEGA LHLMYEEMEV LSPLVATREF 360 CDLRYCQQIE QGSWIVVNVS YHLPQFVSQS HSYRFPSGCL IQDMPNGYSK VTWVEHIETE 420 EKEPIHELYR EMIHKGIAFG AERWVTTLQR MCERFASLLA PATSSRDLGG VIPSPEGKRS 480 MMRLAHRMVS NYCLSVSRSN NTRSTVVAEL NEVGVRVTAH KSPEPEGTIL CAATTFWLPN 540 SPQNVFSFLK DERTRPQWDV LSNGNAVQEV AHIANGSHPG CCISVLRASN ASQSNNMLIL 600 QESSIDSSGA LVIYSPVDLA ALNIAMSGDD TSHIPLLSSG FAISPDGNRN CSTGEQGGGA 660 STSSARSSSS GFGGGGGSLI TVGFQIMVSN LPSAKLNMES VETVNNLIGT TVHQIKAALN 720 NCPSASTTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g28290 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003979 | 0.0 | BT003979.1 Arabidopsis thaliana clone RAFL15-10-L20 (R20587) putative homeobox protein (At1g73360) mRNA, complete cds. | |||
GenBank | BT004915 | 0.0 | BT004915.1 Arabidopsis thaliana clone U20587 putative homeobox protein (At1g73360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390565.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | V4M9K6 | 0.0 | V4M9K6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390565.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |