PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27870
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YA
Protein Properties Length: 324aa    MW: 36004.2 Da    PI: 9.7224
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32163218258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  Tp5g27870 163 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 218
                8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.8E-38160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.681161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.9E-27163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.6E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.6E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MHQMNKKDST LPYLNTSISW GVVPTETLSL KVDARSEHMQ NTKQISFQDQ DSSSTQSTGQ  60
SYTEVASSGD DNPCRQISFS TKSGSEETQR TGFAAHPKSG SMTGFPNIHF APTQANFSFQ  120
YADPHLGGLL AATYLPQAPT CNPQMVGMVP GRVPLPVEIT EAEPVFVNAK QYHAIMRRRQ  180
QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAIEQEHDK  240
SVQRENKKAN MLRFEAHMLQ RSKDRGSTTS GSDITSVSDG ADIFGHTEFQ FSGFPTQTTR  300
AMHVRGQSND MHGGGELHHF SVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20163222362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390615.10.0nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLV4M9Q40.0V4M9Q4_EUTSA; Uncharacterized protein
STRINGXP_006390615.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3