PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27450
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 294aa    MW: 32872.3 Da    PI: 4.8584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27450genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1896147156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                s+y+G+r+++ +grW+AeIrdp     +  r++lg+f +ae+Aa+a++  +k+++g+
  Tp5g27450  96 SRYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNSAEDAARAYDLEAKRIRGA 147
                79********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.45E-3096155No hitNo description
SuperFamilySSF541715.49E-2296155IPR016177DNA-binding domain
PfamPF008474.9E-1296146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3097155IPR001471AP2/ERF domain
PROSITE profilePS5103223.99997154IPR001471AP2/ERF domain
SMARTSM003805.2E-3597160IPR001471AP2/ERF domain
PRINTSPR003671.4E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.4E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MCGGAIIADY IPPSRSGRST ADQAKNARAS KSSWRRDDVV DLTINDFHGF EEFESEDDEI  60
DGFSTAKPSS LFFSTRKPAG SNRSMNREDG KKTRNSRYRG IRRRPWGRWA AEIRDPIKGV  120
RVWLGTFNSA EDAARAYDLE AKRIRGAKAK LNFPNESWIS SSRKRKASPQ PQVKTVQQIE  180
EKHEADDLGE LAAVATSVPS STCLDFLWEE NDNADTLQVD TQWLEDVIVG DAKKKQKGSD  240
GEANVNALLS EELLAFENQT ECFFQMPFME GRNCDSSTSL SSLLDGGNDI DLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2093154163ATERF1
3gcc_A1e-2093154163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0165295e-51AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence.
GenBankBT0020635e-51BT002063.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g72360) mRNA, complete cds.
GenBankBT0062595e-51BT006259.1 Arabidopsis thaliana At1g72360 mRNA, complete cds.
GenBankCP0026845e-51CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390669.11e-153ethylene-responsive transcription factor ERF073
SwissprotQ8H0T54e-92ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLV4JRP21e-152V4JRP2_EUTSA; Uncharacterized protein
STRINGXP_006390669.11e-152(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.23e-76ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]