PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g27300
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 324aa    MW: 36325.3 Da    PI: 5.0247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g27300genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15125176155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Tp5g27300 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 176
                79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.34E-13123180No hitNo description
SuperFamilySSF474593.53E-17124190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-14124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.418124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVYPQ EPFSYISCKD FQFHDLYFQQ EEDRDPLDTK NNIKLGQEQR QGLASINYNG  60
NGGDNSDNYN YNDQEDLQWP RDDLPYGSIV DTENQALPSD VATGGGRRKR RRTRSSKNKE  120
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASIVGGAIN YLKELEHHLQ  180
SMEPPVKTTA TEADGAPTGD QSNTIVASSS GPFSDFFAFP QYSSRPSSSS VAEGTAEIEV  240
TMVECHASVK ILAKKRPKQL LKLVASIQSL RLTLLHLNVT TRDDSVLYSI SLKVEEGSQL  300
NTVEDIAAAV NQILRRIEEE SSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RKRRR
2107112RKRRRT
3125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g27300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022555051.10.0transcription factor bHLH96-like isoform X1
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078IKL00.0A0A078IKL0_BRANA; BnaC06g24170D protein
STRINGXP_010471241.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]