PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g26610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20237.5 Da PI: 5.7159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p + + r++lg+f t+e+Aa a++ a+ ++g Tp5g26610 22 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71 69****999.**********833...59*********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-22 | 21 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.14E-31 | 21 | 81 | No hit | No description |
PROSITE profile | PS51032 | 23.63 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-32 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-11 | 22 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-13 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-13 | 61 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAGLSNSSNN ARSDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT 60 AYDVAAFHFR GREARLNFPE LASSLPRPAD SSSESVRMAA HEAALCLRTE PVETTMQVDT 120 SSSSNVGPSP TMVRLSPREI QAINESTLGS PTMLMHSTYD SMGFANDWGM NAWDSYQTDS 180 LWDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-17 | 23 | 79 | 6 | 63 | ATERF1 |
3gcc_A | 6e-17 | 23 | 79 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g26610 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619969.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 1e-106 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A0D3APU9 | 1e-118 | A0A0D3APU9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D9C0 | 1e-118 | A0A3P6D9C0_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g072910.1 | 1e-119 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-109 | ERF family protein |