PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g26360

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 238aa MW: 26967.7 Da PI: 6.6471

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g26360	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	62	115	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ n++Er RR r+ ++ +L +llP s+ ++kK +i +++ YI +L Tp5g26360 62 KKQERNANERLRRMRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVITYIPNL 115 67889**********************87888889************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-9	55	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-8	61	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.274	61	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.25E-4	62	120	No hit	No description
SMART	SM00353	8.2E-4	67	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSNHQTLASN LLDDLLHIPA ETIGDKESGE KDDMCQAQSE RKGKEVVVLH DQDHHGPSGA 60 AKKQERNANE RLRRMRLHAS YLTLGTLLPD HSSSSKKKWC APSIMDRVIT YIPNLHNEVE 120 ELTLRKNKLV EAIENQKSRE LVRQEPHHIR AISVLELGGS RDEAVVQISM KKEKEDEFSN 180 LLHVVEMQGL SILSASTSLV CRDQRVVCYN FHVKMDEKPC EGDDYIIVLK NNIISSLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g26360

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018464640.1	1e-137	PREDICTED: uncharacterized protein LOC108835920
Swissprot	F4I8F9	2e-99	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A3N6QF87	1e-137	A0A3N6QF87_BRACR; Uncharacterized protein
STRING	Bra007968.1-P	1e-134	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-102	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]