PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp5g26200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 22138 Da PI: 9.2927 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 38 | 81 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++Ed+l+++++++lG++ W++Ia +++ gRt++++k +w +yl Tp5g26200 38 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDNEVKIHWETYL 81 79******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.73E-18 | 19 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-21 | 28 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.862 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-15 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 38 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-12 | 38 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MNKIRLRALS RPSGLLHRAK RCRVRGRNYA KPELKQSNFS KDEDDLILKL HALLGNRWSL 60 IAGRLPGRTD NEVKIHWETY LKRKHMTMGI DPTNHRLYHH TNYISTSSIN ASHKKHETDI 120 ISDQSSSVSE SCDVTILPVS STNCSDDHSA SAGHNRLPDL NIGLIPTETV TSLPVCCLQE 180 SSNPSSSTSQ ETLLLFR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 19 | 84 | 42 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp5g26200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ468346 | 1e-170 | DQ468346.1 Isatis tinctoria putative MYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461377.1 | 1e-102 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 5e-36 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A397YSN5 | 1e-103 | A0A397YSN5_BRACM; Uncharacterized protein | ||||
STRING | Bo6g112670.1 | 5e-99 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71030.1 | 2e-93 | MYB-like 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|