PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g26090
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23899.9 Da    PI: 8.9885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g26090genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1970125156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rrk+ ++tk+q + Le+ F +n++++ ++++eLA+ l+L++rqV vWFqNrRa+ k
  Tp5g26090  70 RRKKLRLTKDQSHLLEKSFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSK 125
                79999*************************************************98 PP
2HD-ZIP_I/II109.81.8e-3571159190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+k+q++lLE+sF ++++L+p++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rL+ eveeLr +
    Tp5g26090  71 RKKLRLTKDQSHLLEKSFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELR-A 159
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.14E-2056126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1860125IPR009057Homeodomain-like
PROSITE profilePS5007118.38267127IPR001356Homeobox domain
SMARTSM003891.9E-1869131IPR001356Homeobox domain
CDDcd000862.75E-1670128No hitNo description
PfamPF000469.9E-1770125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PfamPF021833.0E-9127161IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-15127170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAVSPNSSSL ELTISIPSFS PSSSHPSSGD HMVRDLDINQ TPKTEEDREW IMIGATPHVN  60
DEDTNSSGRR RKKLRLTKDQ SHLLEKSFIQ NHTLTPKQKQ ELATFLKLSQ RQVEVWFQNR  120
RARSKLKHTE MECEYLKRWF GSLKEQNRRL QIEVEELRAL KPVSTTILTM CPRCERVTDA  180
ADNDSNAVEE GTAPRSKSRM TISSSSSLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775GRRRKKLRL
26874RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g26090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758370.0AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBankAK1759650.0AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBankEU3391860.0EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474836.11e-127PREDICTED: homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM71e-110ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A1J3JI871e-128A0A1J3JI87_NOCCA; Homeobox-leucine zipper protein ATHB-X
STRINGBra016174.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.11e-111homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]