PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g25630

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TALE

Protein Properties

Length: 324aa MW: 36741.1 Da PI: 4.6556

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g25630	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	267	301	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ Tp5g25630 267 KWPYPTEADKISLAEETGLDQKQINNWFINQRKRH 301 569*****************************885 PP
2	ELK	33.6	8.4e-12	221	242	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+qLlrK++++++sLk EFs Tp5g25630 221 DLKDQLLRKFGSHISSLKLEFS 242 6********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	5.7E-21	80	124	IPR005540	KNOX1
Pfam	PF03790	1.5E-20	82	123	IPR005540	KNOX1
SMART	SM01256	2.5E-27	131	182	IPR005541	KNOX2
Pfam	PF03791	4.9E-25	135	181	IPR005541	KNOX2
PROSITE profile	PS51213	9.935	221	241	IPR005539	ELK domain
SMART	SM01188	4.2E-6	221	242	IPR005539	ELK domain
Pfam	PF03789	7.6E-9	221	242	IPR005539	ELK domain
PROSITE profile	PS50071	12.973	241	304	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-19	242	314	IPR009057	Homeodomain-like
SMART	SM00389	3.7E-14	243	308	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.3E-28	246	305	IPR009057	Homeodomain-like
CDD	cd00086	2.68E-13	250	305	No hit	No description
Pfam	PF05920	3.6E-18	261	300	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	279	302	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0010094	Biological Process	specification of carpel identity
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDRMCGFRSA GDYSEKSALM MSSSESLMSP SDYQNLICSS AAGENRLFGS DELFSAALSS 60 EAVSIAPRTR TADQDNFSVG VIKSKISSHP LYPRLLQTYI DCQKVGAPME IACLLEEIQR 120 ENDVYKRDVA PVSCFGADPE LDEFMETYCD ILVKYKSDLA RPFDEATTFL NKIEMQLQDL 180 CTGPASARGL SDDGAVSSDE ELREGDDVAT QDSQQRSNDR DLKDQLLRKF GSHISSLKLE 240 FSKKKKKGKL PREARQALLD WWNVHYKWPY PTEADKISLA EETGLDQKQI NNWFINQRKR 300 HWKPSEHMPF AVMDDSSETF FTEE

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g25630

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATU14175	0.0	U14175.1 Arabidopsis thaliana clone KNAT2 knotted-like homeobox protein gene, partial cds.
GenBank	X81353	0.0	X81353.1 A.thaliana mRNA for ATK1 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127805.1	0.0	PREDICTED: homeobox protein knotted-1-like 2
Refseq	XP_013691260.1	0.0	homeobox protein knotted-1-like 2
Swissprot	P46640	0.0	KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBL	A0A398AAQ3	0.0	A0A398AAQ3_BRACM; Uncharacterized protein
TrEMBL	M4CUM5	0.0	M4CUM5_BRARP; Uncharacterized protein
STRING	Bra007920.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM835	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70510.1	1e-180	KNOTTED-like from Arabidopsis thaliana 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang XL,Yang ZP,Zhang J,Zhang LG Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana. Int J Mol Sci, 2013. 14(7): p. 14872-91 [PMID:23863694] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Scofield S,Dewitte W,Murray JA STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1. Plant Signal Behav, 2018. [PMID:24776954] Lee JE,Lampugnani ER,Bacic A,Golz JF SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. Plant J., 2014. 80(1): p. 122-35 [PMID:25060324] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Li Z, et al. Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis. J Integr Plant Biol, 2016. 58(12): p. 959-970 [PMID:27273574] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]