PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g24760

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 414aa MW: 47071.8 Da PI: 7.8257

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g24760	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.3e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t+ g+Wkatg+dk+++s+ +++ Tp5g24760 16 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMKGEKEWYFYCPRDRKYRNSTRPNRVTSGGFWKATGTDKPIYSSdGSKC 114 579*************************.89***********76667899**********************************966677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +gl+k+Lvfykgra kg+ktdW+mhe+rl Tp5g24760 115 IGLRKSLVFYKGRAAKGVKTDWMMHEFRL 143 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-59	11	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.018	16	170	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MGKINNGEAK KMEDVLLPGF RFHPTDEELV SFYLRRKVEH RPLSIKLITQ LDIYKYDPWD 60 LPKFAMKGEK EWYFYCPRDR KYRNSTRPNR VTSGGFWKAT GTDKPIYSSD GSKCIGLRKS 120 LVFYKGRAAK GVKTDWMMHE FRLPSASSHT LLETHSSPND SWAICRILRK TNTTALRAIS 180 QSFVSSLPTE ASTDTEPYEK PSNTAQFSSE KILKNSASFK FYKKNMNVTK QRSYYDDIEA 240 TETSTCTTTS PFSYLDFTSS YSPGPCLDQQ YVRSLLLASQ ETQPSQLPKF INNNDISSYM 300 LNMASLDSSF QGGYTNLIGS NIDLTSAILA QEQCPALVNL PQEYQENGFE GHMDGANQDH 360 HQALSHTFKF GDLSSTSTII GDQHQNQKHR MLMESYYSSF SPINDDLPTC FSIT

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MGKINNGEAK KMEDVLLPGF RFHPTDEELV SFYLRRKVEH RPLSIKLITQ LDIYKYDPWD  60
LPKFAMKGEK EWYFYCPRDR KYRNSTRPNR VTSGGFWKAT GTDKPIYSSD GSKCIGLRKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSASSHT LLETHSSPND SWAICRILRK TNTTALRAIS  180
QSFVSSLPTE ASTDTEPYEK PSNTAQFSSE KILKNSASFK FYKKNMNVTK QRSYYDDIEA  240
TETSTCTTTS PFSYLDFTSS YSPGPCLDQQ YVRSLLLASQ ETQPSQLPKF INNNDISSYM  300
LNMASLDSSF QGGYTNLIGS NIDLTSAILA QEQCPALVNL PQEYQENGFE GHMDGANQDH  360
HQALSHTFKF GDLSSTSTII GDQHQNQKHR MLMESYYSSF SPINDDLPTC FSIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	16	174	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	16	174	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	16	174	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	16	174	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	16	174	20	172	NAC domain-containing protein 19
3swm_B	1e-53	16	174	20	172	NAC domain-containing protein 19
3swm_C	1e-53	16	174	20	172	NAC domain-containing protein 19
3swm_D	1e-53	16	174	20	172	NAC domain-containing protein 19
3swp_A	1e-53	16	174	20	172	NAC domain-containing protein 19
3swp_B	1e-53	16	174	20	172	NAC domain-containing protein 19
3swp_C	1e-53	16	174	20	172	NAC domain-containing protein 19
3swp_D	1e-53	16	174	20	172	NAC domain-containing protein 19
4dul_A	1e-53	16	174	17	169	NAC domain-containing protein 19
4dul_B	1e-53	16	174	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g24760

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	0.0	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453435.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-174	FEZ_ARATH; Protein FEZ
TrEMBL	A0A397YX86	0.0	A0A397YX86_BRACM; Uncharacterized protein
STRING	Bra004403.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-173	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]