PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g24120

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 317aa MW: 35055.6 Da PI: 5.8225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g24120	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.2e-15	48	97	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ +K + a+ L ++++Y+++Lq Tp5g24120 48 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 97 899***********************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-18	44	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-22	45	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.355	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-14	48	101	No hit	No description
Pfam	PF00010	9.4E-13	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-11	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MRTGKGNQEE EDYGEEDFGS KREGPSSNNS ITVASRDAKE NDKASAIRSK HSVTEQRRRS 60 KINERFQILR ELIPNSEQKR DTASFLLEVI DYVQYLQEKV QKYEGSYPGW SQEPTKLTPW 120 RNNHWRVQSL ANHPVAVNNG SGPVIQFPGK FEENTVASVP ATVAEMQNPV ESEKGRAITS 180 KPIDSQPELD DKGLPPVQPI HPFVHGEQAN NECPATSVGL GLSNDLVIEG GTISISTVYS 240 HELLSSLTQA LQNAGIDLSH AKLSVQIDLG KRANQGLTHD DPSNKNPLSS DTEGATRSRN 300 PSVEEESEHS HKRMKTL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g24120

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352689	0.0	AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391065.1	0.0	transcription factor BIM2 isoform X2
Swissprot	Q9CAA4	0.0	BIM2_ARATH; Transcription factor BIM2
TrEMBL	E4MVZ2	0.0	E4MVZ2_EUTHA; mRNA, clone: RTFL01-03-H22
TrEMBL	V4MAX5	0.0	V4MAX5_EUTSA; Uncharacterized protein
STRING	XP_006391066.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	0.0	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]