PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g24060

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 500aa MW: 53785.4 Da PI: 6.0185

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g24060	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.3e-09	325	373	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Tp5g24060 325 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 373 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-17	320	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.87E-11	320	377	No hit	No description
PROSITE profile	PS50888	15.478	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-17	323	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-6	325	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MDISEKDEFS AEKRNTMNYD SANNQLADWR ISGSNPVSAP IDTYPTENLI SGCASSCSPS 60 QMMDSLGQTL WYDPTNVQAV GYGGFNGGNA SSSSSFRGNI DRSLEMGWNL PNLLPPKGNG 120 LFLPNASSFL PPGMAQFPAD SGFIERAARF SLFSGGNFSD MVNQPLGNPE SIGLFLQGGG 180 TMQGQCPSNE VNVGGAHNDA STAMKDTNIR STEQANKPNV PGSGNVSEDT QSSGGNGQKG 240 GETSSKGFDS KKRKRNGQNS EADQSHRSQQ SEEEPDKNGD KKRTDEQSPN SPGNKTNSGK 300 QQGKQMSDPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV 360 MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGSS SATPFPQNMS 420 MVYPPLPHGF MQQTLSSIGR TISSPLSPMN GGFKRQETNG WEGDLQNVIH INYGAGDVPP 480 DPQAATTAAS LPAANMKVEP

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MDISEKDEFS AEKRNTMNYD SANNQLADWR ISGSNPVSAP IDTYPTENLI SGCASSCSPS  60
QMMDSLGQTL WYDPTNVQAV GYGGFNGGNA SSSSSFRGNI DRSLEMGWNL PNLLPPKGNG  120
LFLPNASSFL PPGMAQFPAD SGFIERAARF SLFSGGNFSD MVNQPLGNPE SIGLFLQGGG  180
TMQGQCPSNE VNVGGAHNDA STAMKDTNIR STEQANKPNV PGSGNVSEDT QSSGGNGQKG  240
GETSSKGFDS KKRKRNGQNS EADQSHRSQQ SEEEPDKNGD KKRTDEQSPN SPGNKTNSGK  300
QQGKQMSDPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV  360
MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGSS SATPFPQNMS  420
MVYPPLPHGF MQQTLSSIGR TISSPLSPMN GGFKRQETNG WEGDLQNVIH INYGAGDVPP  480
DPQAATTAAS LPAANMKVEP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g24060

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391072.1	0.0	transcription factor bHLH49
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	V4KM38	0.0	V4KM38_EUTSA; Uncharacterized protein
STRING	XP_006391072.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]