PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23950
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family RAV
Protein Properties Length: 354aa    MW: 39550.6 Da    PI: 9.7914
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23950genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-1362110155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a+ k++g
  Tp5g23950  62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARSYDIAAHKFRG 110
                89****9888.8*********3.....5*************************98 PP
2B3102.23e-32191291195
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk++ae+h      +++  +++ + +ed sg++W+++++y+++s++yvltkGW++Fvk++++++gD+v+F+++   +++l++
  Tp5g23950 191 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpspSLSVSNGVLINFEDVSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNVRAGDVVTFERSTGPDRQLYI 290
                89*************************9999966777999*************************************************87667777776 PP

                E CS
         B3  95 k 95 
                 
  Tp5g23950 291 D 291
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-2462116No hitNo description
PfamPF008473.2E-862110IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-1662118IPR016177DNA-binding domain
PROSITE profilePS5103219.71763118IPR001471AP2/ERF domain
SMARTSM003803.2E-2863124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1863117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.2E-39184299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-31189287IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-29190281No hitNo description
SMARTSM010196.4E-26191296IPR003340B3 DNA binding domain
PfamPF023625.9E-29191292IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916191296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVSSCTDEIS STSESFSTAT ATKFSAPPLP PLRLYRMGSG GSSVVLDSEN GVETESRKLQ  60
SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARS YDIAAHKFRG RDAVVNIKTL  120
PAAEEDDNGE LFFLEAHSKA EIVDMLRKHT YADELVQSNK RRFLSVVANE KSNGTSRTEN  180
ATVSRTREVL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLP SPSLSVSNGV LINFEDVSGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKEKNV RAGDVVTFER STGPDRQLYI DWKIRSGPSK  300
SPVPVVVRLF GVDIFDVTSV RPDDVVAARG RKRSQDVDML VLGCSKKQAI VNAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-6118829711119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23950
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716688.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A3P6D8B20.0A0A3P6D8B2_BRAOL; Uncharacterized protein
STRINGA0A087HGQ90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]