PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g23920

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 356aa MW: 39320.9 Da PI: 6.0829

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g23920	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.9e-14	166	212	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Tp5g23920 166 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 212 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	166	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-14	167	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	167	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.22E-5	176	215	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.0E-4	252	323	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MCAKKEEEVE SSGAMNNIQN YQNDLFFHQL ISHHHHQDPS QSETFGAPAN NVGSGFTIFS 60 QDSVSPIWPT SIQPPFDPFP PPSSPASFYG SFFNRSRAQH QGLQFGYEGF GGATSATHHH 120 HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN 180 NHLAKLRSIL PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETSLVPTECD ELTVAFTEEE 240 ETGDGRFVIK ASVCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN VLFVTGEESS 300 GEEEMGEYCI GTIEEALKAV MEKSNVDESS SGNAKRQRMS SHNTITIVEQ QQQHHR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MCAKKEEEVE SSGAMNNIQN YQNDLFFHQL ISHHHHQDPS QSETFGAPAN NVGSGFTIFS  60
QDSVSPIWPT SIQPPFDPFP PPSSPASFYG SFFNRSRAQH QGLQFGYEGF GGATSATHHH  120
HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN  180
NHLAKLRSIL PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETSLVPTECD ELTVAFTEEE  240
ETGDGRFVIK ASVCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN VLFVTGEESS  300
GEEEMGEYCI GTIEEALKAV MEKSNVDESS SGNAKRQRMS SHNTITIVEQ QQQHHR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g23920

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391094.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	V4JST7	0.0	V4JST7_EUTSA; Uncharacterized protein
STRING	XP_006391094.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]