PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 339aa    MW: 37067.4 Da    PI: 5.1818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15113160253
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                +  GVr++k +g+W+AeIr+p     + +r +lg+f+t+eeA++a+   rk +
  Tp5g23630 113 KPVGVRRRK-WGKWAAEIRHPI----TkTRTWLGTFDTEEEAHQAYKDKRKVY 160
                789***998.**********72....36******************9999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.09E-20112175No hitNo description
SMARTSM003805.6E-16113179IPR001471AP2/ERF domain
PfamPF008478.9E-10113160IPR001471AP2/ERF domain
PROSITE profilePS5103216.937113173IPR001471AP2/ERF domain
PRINTSPR003672.2E-6114125IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15115160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-18116155IPR001471AP2/ERF domain
PRINTSPR003672.2E-6136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVESRKQRSL SDMKKPKRSN TLVSHPQETQ QPLRKVRIIV NDPYATDDSS SDEEEVKKKP  60
REVKRIVREI NFPPLKSTAR VEPSESSSQD STKTISKKAA ALLAAPHTNT SKKPVGVRRR  120
KWGKWAAEIR HPITKTRTWL GTFDTEEEAH QAYKDKRKVY DALVGITATT NGSVSVSENA  180
KPDVSSSETS QCSRSSPIAP LEQDTSASAP TAPAPACVKA KEEIKITTNY DATGVDFSKE  240
SLYDFTLADI QIPDLDFCAN EGLMGAGGNE HDLDFECFFA GGQLDDFGLL EDICGFEDGG  300
PSALPDFDFA DIALELAGSS FLDQTASQHI SCPMKSFAA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391127.11e-145ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-112EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLV4KM741e-143V4KM74_EUTSA; Uncharacterized protein
STRINGXP_006391127.11e-144(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-89ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]