PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g23370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 33730.6 Da PI: 5.4175 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll +++ G g+W+++a++ g++Rt+k+c++rw++yl Tp5g23370 20 RGPWTLEEDTLLTNYILHNGEGRWNLVAKCAGLKRTGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Tp5g23370 73 RGNLTPQEQLLILELHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.782 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.03E-30 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.94E-10 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.264 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-11 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MENSMKKKSF KESEDAELRR GPWTLEEDTL LTNYILHNGE GRWNLVAKCA GLKRTGKSCR 60 LRWLNYLKPD IRRGNLTPQE QLLILELHSK WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK 120 QARQLNIESN SDKFFDAVRS FWVPRLMEKM EQNSSTTTYS CPQNNNNNNN NSLLPPSQSY 180 DSMISTQTYT DFSGQKPCLS NMDGSTSSST FMPDLMTVPH FMDHNNIIDG SMCYHGGNND 240 QELGGYIPGM EEYYYMGNSD IGTECHVAEA YEDVTQDPMW NMDDIWQFRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 17 | 122 | 4 | 108 | B-MYB |
1gv2_A | 3e-24 | 17 | 122 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-23 | 17 | 122 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-23 | 17 | 122 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 6e-24 | 15 | 122 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g23370 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975655 | 0.0 | KM975655.1 Brassica napus MYB transcription factor 62.1 (MYB62.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127621.1 | 1e-180 | PREDICTED: transcription factor MYB24-like | ||||
Swissprot | Q9C9G7 | 1e-157 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A087HGJ0 | 0.0 | A0A087HGJ0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HGJ0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2632 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 1e-159 | myb domain protein 62 |
Publications ? help Back to Top | |||
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