PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 677aa    MW: 76384.8 Da    PI: 4.5076
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.92.5e-09230274348
    G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkS 48 
                + +Wt e H +F+ a++ L G+ek  Pk+il +m+   L   +v S
  Tp5g23230 230 KNVWTLERHMKFLAAISIL-GEEKSRPKSILSIMNDSNLHHRQVDS 274
                678****************.9******************9999988 PP
2Response_reg37.21.6e-13191251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   +l++d +p+    l+ +le+  y +v ++ +++ea+ ++++++ ++l+++ iemp++d + +l+ +  +e  +p i++t + + + + + l   a  
     Tp5g23230  19 ILLIDHDPISVAFLNPMLEQFLY-KVMSVNEASEAVSMIEKQKdIGLVIVNIEMPHIDSHSFLTAMLDNE--IPLILITPEIKTKEVSDLLTKRACF 112
                   89*********************.***************77666**********************9988..************************* PP

                   EEESS--HHHHHH CS
  Response_reg  97 flsKpfdpeelvk 109
                    l Kp++++++ +
     Tp5g23230 113 WLKKPISESDIKN 125
                   ******9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.68E-1616154IPR011006CheY-like superfamily
SMARTSM004483.1E-517127IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.8E-1917149No hitNo description
PROSITE profilePS5011025.08818131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-1119125IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.58E-1020130No hitNo description
SuperFamilySSF466896.09E-5227275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-8228274IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-7229274IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAGSLTGFVV PKCVGDISIL LIDHDPISVA FLNPMLEQFL YKVMSVNEAS EAVSMIEKQK  60
DIGLVIVNIE MPHIDSHSFL TAMLDNEIPL ILITPEIKTK EVSDLLTKRA CFWLKKPISE  120
SDIKNLWQHV VPKKTQDVEK INIAEQEENV MDQSMKQIEA FRENLKRQRT SQSSLLGRRP  180
FIKRFTTSDM FQKRKGIAND EWETKPACHI EIESKREEEH TMESNFERRK NVWTLERHMK  240
FLAAISILGE EKSRPKSILS IMNDSNLHHR QVDSFRKPVA ERKAKMPKFH LGGKSDLSNH  300
SLSGNVLNKL SMKVNYVPSA KSNIPSTNTV NNSGLSSGNP NVLSGLPSSV GASNVDAVQM  360
ESYGLCIPRS SPNPFKSSSS VLETDRNQLD LEPIPKPFSN FPPADLCTMG ETNMNHIGWG  420
PLGENYSHHE TNMNQMDWMP TTEDYLLPET DMNMIVPETN TNHMGWASSG LGYVTSENMV  480
PSKSNLNQMG RDSSGENHGL SQDMIFNETN RNHLGFVSGE TSYEIAPDTN TNEVDWDWLL  540
SEESYALLND MSFSETPTQV GLVPRETNME EMGLVPCEEG NDVPIEDLIC FDTDVNDVEL  600
DSWLENYDPF LNSPMDSIPH VSMEEHDDPL AMHLGSTSQQ HNMMESANPR EAVEGINHFE  660
DDLESMDWMV EIQEENA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23230
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391170.11e-173putative two-component response regulator-like APRR6
SwissprotQ9C9F61e-113APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLV4KN650.0V4KN65_EUTSA; Uncharacterized protein
STRINGXP_006391467.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.11e-115pseudo-response regulator 6