PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g22990
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 337aa    MW: 38393.1 Da    PI: 4.6147
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g22990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.79.1e-34201122102
                   HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k ye+++d++++++isws++g nsfv+ld++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++         weF+++ F kg+k+ll+++
     Tp5g22990  20 FLRKCYEMVDDSSTDSIISWSTSGdNSFVILDTTLFSAQLLPKYFKHSNLSSFIRQLNIYGFRKVDADH---------WEFANDGFVKGQKDLLKNV 107
                   9********************55549****************************************999.........******************9 PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                    r+k+
     Tp5g22990 108 IRRKN 112
                   99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3410105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.79E-3215110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5616110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2820110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVKSSDGVES SSSSSSVAPF LRKCYEMVDD SSTDSIISWS TSGDNSFVIL DTTLFSAQLL  60
PKYFKHSNLS SFIRQLNIYG FRKVDADHWE FANDGFVKGQ KDLLKNVIRR KNVQSSENQS  120
KSVYKQDSAT DASQEKPETS ELWKEVDILK GDKNALAQEL VKVRQYQEIT DTKMLHLKDR  180
VQGMEESQQE MLSFLVMVMQ NPSLLPPSDG TAKSSSNDLN DFLRNADMLK FCLDENHVPL  240
IIPDLYDDGA WEKLLLLSPS KKKKMKEKNV KKGKDDSALE EDEEEDGKME LDKSRALELI  300
QEEMERQDDF DFGQLTPERS RNLEILTKQM GLLASNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-251011019129Heat shock factor protein 1
5d5v_B4e-251011019129Heat shock factor protein 1
5d5v_D4e-251011019129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260271KKKKMKEKNVKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g22990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125631e-103AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBankAJ2518661e-103AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943961e-103AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
GenBankCP0026841e-103CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302467.20.0LOW QUALITY PROTEIN: heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW840.0D7KW84_ARALL; Predicted protein
STRINGBostr.26959s0105.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-148heat shock transcription factor A8