PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g22250
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CAMTA
Protein Properties Length: 1044aa    MW: 116323 Da    PI: 5.9225
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g22250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.61.1e-53111262116
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                ++e ++rwlk+ e++ iL+n+e+++l  +++++p+sgsl+L+n++++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyYah+e+++tfqrr+yw
  Tp5g22250  11 YQEaQTRWLKPPEVYFILQNHERYQLRDTAPQKPTSGSLFLFNKRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALNCYYAHGEHDSTFQRRIYW 110
                56769*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhyle 116
                +L+  +e+ivlvhy++
  Tp5g22250 111 MLDPGYEHIVLVHYRD 126
                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.7817133IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7310128IPR005559CG-1 DNA-binding domain
PfamPF038592.6E-4613126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.52E-17470554IPR014756Immunoglobulin E-set
CDDcd001026.83E-7470555No hitNo description
PfamPF018331.8E-9470553IPR002909IPT domain
Gene3DG3DSA:2.60.40.104.3E-9470557IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.201.9E-14658753IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.273659751IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-14662754IPR020683Ankyrin repeat-containing domain
CDDcd002041.55E-12664751No hitNo description
PfamPF127962.5E-7680752IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0032692721IPR002110Ankyrin repeat
PROSITE profilePS5008810.82692724IPR002110Ankyrin repeat
SMARTSM0001517805827IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876806834IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.72E-11806913IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.21861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.828862891IPR000048IQ motif, EF-hand binding site
PfamPF006120.0016863882IPR000048IQ motif, EF-hand binding site
SMARTSM000158.3E-4884906IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865885909IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4887906IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MQSEYEINTL YQEAQTRWLK PPEVYFILQN HERYQLRDTA PQKPTSGSLF LFNKRVLKFF  60
RKDGHQWRRK KDGRAIAEAH ERLKVGNVEA LNCYYAHGEH DSTFQRRIYW MLDPGYEHIV  120
LVHYRDISDV KEGRKTIGTV LQFSQNPSTL FSSPGSIGTQ NASYNYHIGN STDIHPQHSS  180
TSPGTAEVNS DVVFNSNGVE TPEGSGSSYE FENRQALKRL EEQLSLGDDN VNTVDPLYAQ  240
NESLDSLLEF SKDIDHLTQP ATMHQRPENN RLNRCYGGYV GAQYKVNTVD PLYSQNESLD  300
SLLSIECTAD VNHLGQPATG HQRPDNNRLE RCYGGYIGAQ YHSNNLMLVK NDSGSKGGNG  360
DQEPESWKDM LEACEVSIAQ NSEGSTPDSS KGLLPGMQED SNWSHSNQAD KATLLLPQEL  420
GSFELPACYP ELGAPDSNAE YCRMMNDEGK MGMPLEQEMI QTIAHKQKFT IQDISPEWGY  480
ANETTKVIII GSFLCEPTES TWSCMFGSAE VPFEIIKEGV IRCQAPPCGP GKVNLCITSG  540
DRRSCSQIKE FEYRDKPDTS CPRCSPDELL LLVRFVKTLL SDRKSNLESG FDKLMKKLKA  600
DDDQWSHIIE AIRDGTATPS STVDGLLQEL LKDKLDAWLS SRSQDSQDKD QIYCSLSKQE  660
QGIIHMVAGL GFEWALYPIL GSGVSVDFRD SNGWSALHWA ARFGSEQMVA ALIASGASAG  720
AVTDPSVQDP AGKTAASIAA SNGHKGLAGY LSEVALTNHL LSLTLEETEN SKDSAQVLAE  780
MTVNSISERS PPGNDDPHSL AAVRNAAQAA ARIQAAFRAH SFRKRQQREA AMAACFKEYG  840
IYADIEGISA MSKLAFGNAR NYHKAALSIQ KKYRGYKGRK EFLSLRQKVV KIQAHVRGYQ  900
IRKHYKVICW AVGILDKVVL RWRRKGVGLK GFRQDVETTE DSEDEDILKV FRKQKVDGAV  960
NEAFSRVLSM ANSPVAQQQY QRVLKRYCQT KAELGKTETL GTVGDDDDAL FDIADMEDDN  1020
LFALPEEGKS GSNNNINNCG FRGF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g22250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013774.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1J3F7W40.0A0A1J3F7W4_NOCCA; Calmodulin-binding transcription activator 4
STRINGXP_006391294.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]